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Pto DC3000 BLAST fingerprints

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complete figure legend with list of genomes compared

"BLAST fingerprints" show the representation of Pto DC3000 coding sequences in 58 other genera as determined by BLASTP analysis.  Orthology of Pto DC3000 loci (shown in sequential order on the x-axis) with orfs in selected bacterial genomes (listed on the y-axis) is indicated with colored squares, with intensity of color is proportional to the degree of sequence similarity. Click on the hyperlinks below each thumbnail for larger scale output for the loci in question

  • red = mobile genetic elements
  • green = members of the hrp regulon
  • black = annotated pseudogenes


Magdalen Lindeberg
PPI Project Coordinator
Plant Pathology and Plant-Microbe Biology
Cornell University