| CHARGE Interaction Database |
Displays interactions of individual effectors from P. syringae and other bacterial pathogens on various plant hosts (hosted by UC-Davis) |
select strain of interest at site |
| PAMDB - Plant Associated and Environmental Microbes Database |
Multilocus sequence typing and analysis database designed for identification of plant associated and environmental microbes |
select strain of interest at site |
| Pseudomonas genome database (v2) |
Pseudomonas Genome Database focused primarily on P. aeruginosa but including information on all sequenced pseudomonads. Allows users to view genomes with GBrowse and identify orthologs among seqeunced pseudomonads |
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| PseudoDB |
Database for comparative genome analysis of pseudomonads |
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| Virulence Factors of pathogenic bacteria |
Compare predicted virulence factors among related bacteria |
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| Comprehensive Phytopathogen Genomics Resource |
View comprehensive gene list, unique loci, intergenic regions and putative SSRs.
Resource designed to aid in diagnostic probe development |
select strain of interest at site |
| KEGG |
Kyoto Encyclopedia of Genes and Genomes. Useful for identification of protein families and visualization of metabolic pathways |
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| Transport DB |
Genomic Comparisons of Membrane Transport Systems |
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| psortDB |
Database of predicted protein subcellular localizations for bacteria |
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| MEROPS |
Peptidase database hosted by the Sanger Institute |
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| leelab |
2DE proteome maps generated by Kelvin LEE (U Delaware) |
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| Genome Atlas Database |
Visualize structural features of the genome |
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| GOLD |
Genomes Online Database for comprehensive access to online information |
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| IslandPath |
Genomic Island Identification Aid providing graphic representations of the locations of genomi features associated with horizontal transfer |
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| NCBI |
National Center for Biotechnology Information |
| TIGR-CMR |
The
Institute for Genome Research Comprehensive Microbial Resource |
| DOE JGI |
Department
of Energy Joint Genome Institute |
| Sanger |
Institute for genome research (Cambridge UK) |
| EMBL-EBI |
European Molecular Biology Laboratory and European Bioinformatics Institute |
| Gene Ontology |
Searchable database of Gene Ontology terms and the genes to which they have been assigned |
| ASAP |
Relational database and web interface developed to store, update and distribute genome sequence data and gene expression data |
| ISI |
Institute for Scientific Information |
