Updates to the Psp 1448A chromosome sequence and annotation:
Locus | Date: Nature of change | Source | |
14 |
PSPPH_1293 | 12-22-08: New product name Product name changed to "type III secretion component protein HrpJ". |
M. Lindeberg, Cornell University |
13 |
PSPPH_5227 | 12-22-08: New gene/CDS Coordinates: 1494211..1494414. Gene name: "hrpT". Product name: "HrpT". |
M. Lindeberg, Cornell University |
12 |
12-8-06: 84 promoter features added (view list of all promoters in tabular form) Format for those promoters identified solely by bioinformatic approaches:
Format for those promoters with experimental confirmation:
|
M. Lindeberg, Cornell University (see literature cited) |
|
11 |
PSPPH_2351 | 12-8-06: Coordinates corrected Coordinates for hopV1 changed from complement(2725396..2727183) to complement(2725396..2727093) . Translated product adjusted accordingly |
M. Lindeberg, Cornell University |
10 |
PSPPH1272 | 8-8-06: Nomenclature Gene name changed from "hrpA1" to "hrpA2". Product name changed from "type III helper protein HrpA1" to "type III helper protein HrpA2" based on phylogenetic analysis of multiple HrpA sequences |
M. Lindeberg, Cornell University |
9 |
PSPPH5226 | 6-21-06:
New gene/CDS |
M.
Lindeberg, Cornell University (based on literature review). |
8 |
all loci | 11-05:
change in locus tag format Locus tag format for all loci has been changed from PSPTO#### to PSPTO_#### |
Genbank |
7 |
all tRNA loci | 11-05:
product names added A qualifier in the format: /product="[name]" has been added to all tRNA features in the annotation |
Genbank |
6 |
PSPPH1266 | 9-05:
Nomenclature Gene named changed from "hopM" to "hopM1" |
M. Lindeberg,
Cornell University |
5 |
PSPPH3028 | 9-05:
Nomenclature Gene named changed from "avrB4" to "avrB4-1". Product named changed from "AvrB4" to "AvrB4-1" |
M. Lindeberg,
Cornell University |
4 |
PSPPH0784 | 9-05:
Nomenclature Gene named added: "avrB4-2". Product named changed from "conserved hypothetical protein" to "type III effector AvrB4-2". |
M. Lindeberg, Cornell University |
3 |
PSPPH5225 | 9-05:
New gene/CDS Coordinates: complement(894856..895116). Gene name: "hopAT1". Product name: "type III effector HopAT1". New evidence reference (PubMed ID): 15701698 |
M.
Lindeberg, Cornell University (based on literature review). |
2 |
PSPPH1525 | 9-05:
Functional assignment Product name changed from "shikimate kinase" to "hypothetical gene conserved among plant-associated proteobacteria". |
D. Schneider, Cornell University |
1 |
PSPPH0105 | 9-05:
Functional assignment Product name changed from "MloB" to "carbon storage regulator related". |
D. Schneider, Cornell University |