PPI logo P. s. pv. tomato DC3000 P. s. pv.phaseolicola 1448A
Pto DC3000 - Genome Project Home Page

DC3000 home

project background

about Pto DC3000

genome properties

tools for genome analysis

Hop database & nomenclature

ongoing annotation

related links

site map

Pseudomonas syringae pv. tomato DC3000 (Pto DC3000) is the cause of bacterial speck on tomato and Arabidopsis, and represents an important model in molecular plant pathology. Sequencing and annotation of the 6,397,126 bp genome and two plasmids (pDC3000A and pDC3000B) was funded by a grant from the NSF Plant Genome Research Program, and completed by The Institute for Genome Research (TIGR) in 3/03. Ongoing functional genomic analyses include identification of Hrp effectors, novel virulence systems and virulence regulators as well as microarray analysis of the Pto DC3000-tomato interaction.

Key to the main menu:

project background - information about project objectives, investigators. and publications funded by NSF-PGRP # DBI-0077622. Links to the full-text articles are included

about Pto DC3000 - description of Pseudomonas syringae pv. tomato DC3000 and its pathogenic properties

genome properties - properties of the genome as described in Buell et al, 2003 including links to analyses performed using the original sequence and annotation

tools for genome analysis - search, perform BLAST analyses and visualize the Pto DC3000 sequence and annotations using the Artemis genome viewer (reflects updates made since the original sequence deposition).

Hop database and nomenclature - database of Hop effector proteins, guides to implementation of the newly proposed Hop nomenclature, and a guide to terminology related to Type III secretion

ongoing annotation - view recent updates and submit changes to the Pto DC3000 sequence/annotation

related links - links to additional genome pages, journals, and databases

Modeling host-pathogen interactions for Pto DC3000 with Gene Ontology Annotation

Systems biology and gene expression modeling

  • mapping of PvdS binding sites
  • transcriptome mapping