Sequencing
and annotation of the genome was completed by The Department of Energy Joint Genome
Institute (DOE-JGI) in May, 2005 and published in Feil
et al. 2005. Please note that these analyses do not reflect changes in the
annotation since its original deposition
General
features:
| Feature |
Chromosome |
| Size
(bp) |
6,093,698
bp |
| G+C
percentage |
59.23% |
| Total
number of genes |
5,217 |
| Percent
Coding |
88.5% |
| Genes
with function prediction |
3,840
(74%) |
| Genes
without function prediction |
1297
(25%) |
|
- with similarity |
1255
(24%) |
|
- without similarity |
42
(0.81%) |
|
Pseudogenes |
47
(0.9%) |
Genome
publication and supporting information:
Feil,
et al, 2005. Comparison of the complete genome sequences of Pseudomonas
syringae pv. syringae B728a and pv. tomato DC3000. Proc.
Natl. Acad. Sci 102:11064-11069.
Guide to supporting
text and Tables 3-7
Table
3 - Families of palindromic repetitive extragenic sequences (REPs)
Table
4 - Insertion sequence (IS) elements present in P. syringae pv. syringae
B728a
Table 5 - Genomic islands unique to Pss B728a when compared with Pto
DC3000
Table 6 - DNA repair and reactive oxygen sequence (ROS) resistance proteins
Table 7 - Members
of the LexA regulon in Pss B728a and Pto DC3000
supporting
Fig 4 - display of coding regions plotted over the entire length of the genome
supporting
Fig 5 - Pie chart graph representing the functional classification of annotated
ORFs in Pss B728a
supporting Fig 6
- A cladogram of RulA proteins found in the Pseudomonas syringae pathovars
and strains
supporting Fig 7 - Neighboring
region of the Pss ice nucleating gene compared with conserved neighborhood regions
in other Pseudomonads
